Bacterial DEAH / RHA

HrpA / HrpB Literature

Proteins  
E. coli
HrpA mRNA processing
HrpB
    HrpA / HrpB do not exist in:
  • Firmicutes (e.g. B.subtilis) /
  • Chlamidiae /
  • Cyanobacteria

Group Alignment

P43329|HrpA_Ecoli_K12.      MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEM

P37024|HrpB_Ecoli_K12.      --------------------------------------------------

                                                                              

 

P43329|HrpA_Ecoli_K12.      AKEIDQAAGKVLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAG

P37024|HrpB_Ecoli_K12.      -----------------------MSSLPVAAVLPELLTALDCAPQVLLSA

                                                    ..***:    ::* *:     *:::.

 

P43329|HrpA_Ecoli_K12.      ETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEP

P37024|HrpB_Ecoli_K12.      PTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAARNVAQRLAELLNEKP

                             **:**:* **   :    **:* *   :*******.**:*:** *: :*

 

P43329|HrpA_Ecoli_K12.      GGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAH

P37024|HrpB_Ecoli_K12.      GDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFH

                            *. :**::* .: *. ** ::::*:*:*   **:*  *   . :*:** *

 

P43329|HrpA_Ecoli_K12.      ERSLNIDFLLGYLKELLP-RRPDLKIIITSATIDPERFSRHFNNAPIIEV

P37024|HrpB_Ecoli_K12.      ERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVIS

                            ****: *: *. * ::    * ***::* ***:* :*:.: : :**:: 

 

P43329|HrpA_Ecoli_K12.      SGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSG

P37024|HrpB_Ecoli_K12.      EGRSFPVERRYLPLPAHQRFDD-----AVAVATAEMLRQESGSLLLFLPG

                            .**::*** ** *:  .    :     *:  *. *: ::. *.:*:*:.*

 

P43329|HrpA_Ecoli_K12.      EREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSG--RRIVLA

P37024|HrpB_Ecoli_K12.      VGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLA

                              **: . : * .    .. : ***. ** .:*.:.: . .   *::***

 

P43329|HrpA_Ecoli_K12.      TNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRK

P37024|HrpB_Ecoli_K12.      TNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRA

                            **:******: **: *:* .  *::*:. ** : **  : :**** .**

 

P43329|HrpA_Ecoli_K12.      GRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGD

P37024|HrpB_Ecoli_K12.      GRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSD

                            **.**:. **.::* ::::    .  ::****:::*:.:::::   * .*

 

P43329|HrpA_Ecoli_K12.      IAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLP

P37024|HrpB_Ecoli_K12.      PAQMSWLDQPPVVNLLAAKRLLQMLGALE------GERLSAQGQKMAALG

                             * :.::: *   *:  . ***: ***:       . :*:. *:::: *

 

P43329|HrpA_Ecoli_K12.      VDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRR

P37024|HrpB_Ecoli_K12.      NDPRLAAMLVSAKNDDEAATAAKIAAILEEP-PRMGNSDLGVAFSRNQPA

                             ***** *::.*::.. .  *  *:: *.   **    *   * ..:: 

 

P43329|HrpA_Ecoli_K12.      FHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDI

P37024|HrpB_Ecoli_K12.      WQQRSQQLLKRLNVR------GGEADSSLIAPLLAGAFADRIARRRGQDG

                            ::::..::*  :*:           .*. :  *    : : :  *. **

 

P43329|HrpA_Ecoli_K12.      YTQLRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGA

P37024|HrpB_Ecoli_K12.      RYQLANGMGAMLDANDALSRHEWLIAPLLLQGSAS---------------

                              ** : :  :  . :: . .   *   ** *  *              

 

P43329|HrpA_Ecoli_K12.      RNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQ

P37024|HrpB_Ecoli_K12.      ----------------PDARILLALLVDIDELVQRCPQLVQ---------

                                            *   :::* **: ..*  * .  ::        

 

P43329|HrpA_Ecoli_K12.      HLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQIDPALCRE

P37024|HrpB_Ecoli_K12.      -----QSDTVEWDDAQGTLKAWRRLQIG----------------------

                                   .  .*: ***:: * .:: :                      

 

P43329|HrpA_Ecoli_K12.      LFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFE

P37024|HrpB_Ecoli_K12.      -----------------------QLTVKVQPLAKPSED------------

                                                   :* .:*: * : *.            

 

P43329|HrpA_Ecoli_K12.      FYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLD

P37024|HrpB_Ecoli_K12.      -------------------------------ELHQAMLNGIRDKGLSVLN

                                                           ::.::**     : :* *:

 

P43329|HrpA_Ecoli_K12.      YPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPG

P37024|HrpB_Ecoli_K12.      WTAEAEQLRLRLLCAAKWLP------------------------EYDWPA

                            :.   .* .*:*  : :: *                        *:: *.

 

P43329|HrpA_Ecoli_K12.      LRRELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVKPLELPLLDSLEREL

P37024|HrpB_Ecoli_K12.      VDDESLLAALETWLLPH---------------------------------

                            :  * ::* :::   *                                 

 

P43329|HrpA_Ecoli_K12.      RRMTGVTVDREDWHWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALK

P37024|HrpB_Ecoli_K12.      --MTGVHSLR----------------------------GLKSLDIYQALR

                              ****   *                            * .  *: :**:

 

P43329|HrpA_Ecoli_K12.      GKVQETLSAVADDGIEQSGLHIWSFGQLPESYEQKRGNYKVKAWPALVDE

P37024|HrpB_Ecoli_K12.      GLLDWGMQQRLDS-------------ELPAHYTVPTG-------------

                            * ::  :.   *.             :**  *    *            

 

P43329|HrpA_Ecoli_K12.      RDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEKLPNKAKLGL

P37024|HrpB_Ecoli_K12.      -SRIAIRYHED------------------NPPALAVRMQEMFGEATNPTI

                             . :**: .::                  * *:    ::* : : ::  :

 

P43329|HrpA_Ecoli_K12.      YFNPYGKVLELIDDCISCGVDKLIDANGGPVWTEEGFAALHEKVRAELND

P37024|HrpB_Ecoli_K12.      AQGRVPLVLELLSPAQRP--------------------------------

                              .    ****:. .                                  

 

P43329|HrpA_Ecoli_K12.      TVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGF

P37024|HrpB_Ecoli_K12.      --------------------------------------------------

                                                                             

 

P43329|HrpA_Ecoli_K12.      VTGNGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQW

P37024|HrpB_Ecoli_K12.      ----------------LQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDD

                                              * : *..:  ..:*:  : :* .  ::.* :

 

P43329|HrpA_Ecoli_K12.      INKLPPARREDEDVKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQ

P37024|HrpB_Ecoli_K12.      PANTAPTRRTKKYS------------------------------------

                              : .*:** .:                                     

 

P43329|HrpA_Ecoli_K12.      ISG

P37024|HrpB_Ecoli_K12.      ---