Bacterial DEAD-box Proteins

Bacterial DEAD-box Group Alignment

P0A9P6|CsdA_Ecoli_K12_.      ---MAEFETTFADLGLK-APILEALNDLGYEKPSPIQAECIPHLLNGRDV

P96614|YdbR_Bacsu.           ------MTITFQDFNLS-SDLMKAINRMGFEEATPIQAQTIPLGLSNKDV

P21693|DbpA_Ecoli_K12_.      -------MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDV

P42305|YxiN_Bacsu.           -------MSHFKNYQIS-HDILRALEGLGYTEPTKVQQSVIPAALERKDL

P0A8J8|RhlB_Ecoli_K12_.      MSKTHLTEQKFSDFALH-PKVVEALEKKGFHNCTPIQALALPLTLAGRDV

P25888|RhlE_Ecoli_K12_.      --------MSFDSLGLS-PDILRAVAEQGYREPTPIQQQAIPAVLEGRDL

P21507|SrmB_Ecoli_K12_.      -----MTVTTFSELELD-ESLLEALQDKGFTRPTAIQAAAIPPALDGRDV

P54475|YqfR_Bacsu.           ------MKETKFELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESV

O34750|YfmL_Bacsu.           ------MTQTWPFLHNAQSFIQENWNASGFQKPTPVQEQAAQLIMDGKDV

                                                         *:   : :*       :  ..:

 

P0A9P6|CsdA_Ecoli_K12_.      LGMAQTGSGKTAAFSLPLLQNLDPELK-------APQILVLAPTRELAVQ

P96614|YdbR_Bacsu.           IGQAQTGTGKTAAFGIPLVEKINPESP-------NIQAIVIAPTRELAIQ

P21693|DbpA_Ecoli_K12_.      RVQAKTGSGKTAAFGLGLLQQIDASLF-------QTQALVLCPTRELADQ

P42305|YxiN_Bacsu.           VVKSQTGSGKTASFGIPLCELANWDEN-------KPQALILTPTRELAVQ

P0A8J8|RhlB_Ecoli_K12_.      AGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQ

P25888|RhlE_Ecoli_K12_.      MASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR-PVRALILTPTRELAAQ

P21507|SrmB_Ecoli_K12_.      LGSAPTGTGKTAAYLLPALQHLLDFP---RKKSGPPRILILTPTRELAMQ

P54475|YqfR_Bacsu.           IGQSQTGTGKTHAYLLPLLNKIDPAKD-------VVQVVITAPTRELANQ

O34750|YfmL_Bacsu.           IAESPTGTGKTLAYALPVLERIKPEQK-------HPQAVILAPSRELVMQ

                                : **:*** .:     .                : ::  *:***. *

 

P0A9P6|CsdA_Ecoli_K12_.      VAEAMTDFSKHMR---GVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRL

P96614|YdbR_Bacsu.           VSEELYKIGQDKR----AKVLPIYGGQDIGRQIRALKKNPNIIVGTPGRL

P21693|DbpA_Ecoli_K12_.      VAGELRRLARFLP---NTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRL

P42305|YxiN_Bacsu.           VKEDITNIGRFKR----IKATAVFGKSSFDKQKAELKQKSHIVVGTPGRV

P0A8J8|RhlB_Ecoli_K12_.      IHADAEPLAEATG----LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRL

P25888|RhlE_Ecoli_K12_.      IGENVRDYSKYLN----IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRL

P21507|SrmB_Ecoli_K12_.      VSDHARELAKHTH----LDIATITGGVAYMNHAEVFSENQDIVVATTGRL

P54475|YqfR_Bacsu.           IYQEALKITQGEEGSQ-IRSKCFIGGTDKQKSIDKLKIQPHLVVGTPGRI

O34750|YfmL_Bacsu.           IFQVIQDWKAG---SE-LRAASLIGGANVKKQVEKLKKHPHIIVGTPGRV

                             :                       *          :    .:::.*.**:

 

P0A9P6|CsdA_Ecoli_K12_.      LDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP--EGHQTA

P96614|YdbR_Bacsu.           LDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVP--SEHQTL

P21693|DbpA_Ecoli_K12_.      LDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP--ASRQTL

P42305|YxiN_Bacsu.           LDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLP--TERTTM

P0A8J8|RhlB_Ecoli_K12_.      IDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM

P25888|RhlE_Ecoli_K12_.      LDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLP--AKRQNL

P21507|SrmB_Ecoli_K12_.      LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETR--WRKQTL

P54475|YqfR_Bacsu.           ADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMP--EDLQML

O34750|YfmL_Bacsu.           FELIKAKKLKMHEVKTIVLDETDQLVLPEHRETMKQIIKTTL--RDRQLL

                              :  .   .     . :::**:* :    .   :  :            

 

P0A9P6|CsdA_Ecoli_K12_.      LFSATMP-EAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRK

P96614|YdbR_Bacsu.           LFSATMP-APIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQE-RKK

P21693|DbpA_Ecoli_K12_.      LFSATWP-EAIAAISGRVQRDPLAIEIDSTDALPP-IEQQFYETSS-KGK

P42305|YxiN_Bacsu.           LFSATLP-QDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVRE-ENK

P0A8J8|RhlB_Ecoli_K12_.      LFSATLS-YRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSN-EEK

P25888|RhlE_Ecoli_K12_.      LFSATFS-DDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDK-KRK

P21507|SrmB_Ecoli_K12_.      LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHK

P54475|YqfR_Bacsu.           VFSATIP-EKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKH-RDK

O34750|YfmL_Bacsu.           CFSATLK-KETEDVLRELAQEPEVLKVQRSKAEAGKVKHQYLICDQ-RDK

                              ****        .  .   :.              : .          *

 

P0A9P6|CsdA_Ecoli_K12_.      NEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQA

P96614|YdbR_Bacsu.           FDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQA

P21693|DbpA_Ecoli_K12_.      IPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQR

P42305|YxiN_Bacsu.           FSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQE

P0A8J8|RhlB_Ecoli_K12_.      MRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQK

P25888|RhlE_Ecoli_K12_.      RELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQG

P21507|SrmB_Ecoli_K12_.      TALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQG

P54475|YqfR_Bacsu.           DKLLFDIMSHLNPYLGIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPR

O34750|YfmL_Bacsu.           -VKLLQKLSRLEGMQALVFVRDIGNLSVYAEKLAYHHVELGVLHSEAKKM

                                *   :        ::* .           *         : .    

 

P0A9P6|CsdA_Ecoli_K12_.      LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHR

P96614|YdbR_Bacsu.           KRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHR

P21693|DbpA_Ecoli_K12_.      DRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHR

P42305|YxiN_Bacsu.           DRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHR

P0A8J8|RhlB_Ecoli_K12_.      KRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHR

P25888|RhlE_Ecoli_K12_.      ARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHR

P21507|SrmB_Ecoli_K12_.      KRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHR

P54475|YqfR_Bacsu.           ERKKVMKQINDLEFTYIIATDLAARGIDIKGVSHVINYELPDDLDFYVHR

O34750|YfmL_Bacsu.           ERAKIIATFEDGEFPLLLATDIAARGLDIENLPYVIHADIPDE-DGYVHR

                              *   :  :       ::***:****:.:  :  * : ::.   : ::**

 

P0A9P6|CsdA_Ecoli_K12_.      IGRTGRAGRAGRALLFVENRERRLLRNIERTMK---LTIPEVELPNAELL

P96614|YdbR_Bacsu.           IGRTGRAGKTGMAMTFITPREKSMLRAIEQTTK---RKMDRMKEPTLDEA

P21693|DbpA_Ecoli_K12_.      IGRTARAGNSGLAISFCAPEEAQRANIISDMLQ---IKLNWQTPPANSSI

P42305|YxiN_Bacsu.           TGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG---FEIPKIEAPSQEEV

P0A8J8|RhlB_Ecoli_K12_.      IGRTGRAGASGHSISLACEEYALNLPAIETYIG---HSIP---VSKYN--

P25888|RhlE_Ecoli_K12_.      IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLK---KEIPRIAIPGYE--

P21507|SrmB_Ecoli_K12_.      IGRTARAGRKGTAISLVEAHDHLLLGKVGRYIE---EPIKARVIDELR--

P54475|YqfR_Bacsu.           VGRTARAGSSGQAMTIYELTDEDALVRLEKMGIEFEY-------------

O34750|YfmL_Bacsu.           SGRTGRAGKEGNVLSLVTKLEESKLKKMAKK-------------------

                              ***.**.  *  : :           :                     

 

P0A9P6|CsdA_Ecoli_K12_.      GKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALL

P96614|YdbR_Bacsu.           LEGQQQVTVERLRTTISENNLNFYMTAAAELL-----EDHDAVTVVAAAI

P21693|DbpA_Ecoli_K12_.      AT-----------------------------------LEAEMATLCIDGG

P42305|YxiN_Bacsu.           ARKKPEFLAKLNDRPESKKDKSEE-------------LNKDIMKLYFNGG

P0A8J8|RhlB_Ecoli_K12_.      -------------------------------------PDALMTDLPKP-L

P25888|RhlE_Ecoli_K12_.      -------------------------------------PDPSIKAEPIQNG

P21507|SrmB_Ecoli_K12_.      -------------------------------------PKTRAPSEKQTGK

P54475|YqfR_Bacsu.           -------------------------------------LELEKGEWKKGDD

O34750|YfmL_Bacsu.           -------------------------------------LGVELSEAVYAGG

                                                                              

 

P0A9P6|CsdA_Ecoli_K12_.      KMAQGER---------TLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRG

P96614|YdbR_Bacsu.           KMATKE--------------PDDTPVR---------------LTDEAP--

P21693|DbpA_Ecoli_K12_.      KKAKMR--------------PGDVLG------------------------

P42305|YxiN_Bacsu.           KKKKIR--------------AVDFVG------------------------

P0A8J8|RhlB_Ecoli_K12_.      RLTR----------------------------------------------

P25888|RhlE_Ecoli_K12_.      RQQRGGGGRGQGGGRGQQQ-------------------------------

P21507|SrmB_Ecoli_K12_.      PSKK----------------------------------------------

P54475|YqfR_Bacsu.           RQRRKKRK------------------------------------------

O34750|YfmL_Bacsu.           KLKTK---------------------------------------------

                                                                              

 

 

P0A9P6|CsdA_Ecoli_K12_.      DREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIG

P96614|YdbR_Bacsu.           ------------------------------------------MVSKRYK-

P21693|DbpA_Ecoli_K12_.      ------------------------------------------ALTGDIG-

P42305|YxiN_Bacsu.           ------------------------------------------TIAKIDG-

P0A8J8|RhlB_Ecoli_K12_.      --------------------------------------------------

P25888|RhlE_Ecoli_K12_.      --------------------------------------------------

P21507|SrmB_Ecoli_K12_.      --------------------------------------------------

P54475|YqfR_Bacsu.           --------------------------------------------------

O34750|YfmL_Bacsu.           --------------------------------------------------

                                                                              

 

P0A9P6|CsdA_Ecoli_K12_.      NIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGE

P96614|YdbR_Bacsu.           -------------------------------------------NQRSSKR

P21693|DbpA_Ecoli_K12_.      -----------------------------------------LDGADIGKI

P42305|YxiN_Bacsu.           -----------------------------------------VSADDIGII

P0A8J8|RhlB_Ecoli_K12_.      -----------------------------------------PRTGNG---

P25888|RhlE_Ecoli_K12_.      -----------------------------------------PRRGEGGAK

P21507|SrmB_Ecoli_K12_.      -----------------------------------------VLAKRAEKK

P54475|YqfR_Bacsu.           -----------------------------------------KTPNEADEI

O34750|YfmL_Bacsu.           --------------------------------------------------

                                                                              

 

P0A9P6|CsdA_Ecoli_K12_.      RRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDST

P96614|YdbR_Bacsu.           RDGQGGGYRGGKGKSNNRSSYDKK---RSNDRRSSGDRRQKKSY------

P21693|DbpA_Ecoli_K12_.      AVHPAHVYVAVRQAVAHKAWKQLQ------GGKIKGKTCRVRLLK-----

P42305|YxiN_Bacsu.           TIMDNASYVEILNGKGPHVLKVMK------NTTVKGKQLKVNKANK----

P0A8J8|RhlB_Ecoli_K12_.      ---------PRR-------TGAPR------NRRRSG--------------

P25888|RhlE_Ecoli_K12_.      SASAKPAEKPSRRLGDAKPAGEQQ------RRRRPRKPAAAQ--------

P21507|SrmB_Ecoli_K12_.      KAKEKEKPRVKKRHRDTKNIGKRR------KPSGTGVPPQTTEE------

P54475|YqfR_Bacsu.           AHRLVKKPKKVKPGYKKKMSYEMEK----IKKKQRRNQSKKRK-------

O34750|YfmL_Bacsu.           --------------------------------------------------

                                                                              

 

P0A9P6|CsdA_Ecoli_K12_.      GRRRFGGDA

P96614|YdbR_Bacsu.           ---------

P21693|DbpA_Ecoli_K12_.      ---------

P42305|YxiN_Bacsu.           ---------

P0A8J8|RhlB_Ecoli_K12_.      ---------

P25888|RhlE_Ecoli_K12_.      ---------

P21507|SrmB_Ecoli_K12_.      ---------

P54475|YqfR_Bacsu.           ---------

O34750|YfmL_Bacsu.           ---------